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Biotechnology Information microarray gene expression datasets
Microarray Gene Expression Datasets, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/expression+microarrays/data+microarray/pm41839687-38-1-25
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Article Title: Bioinformatics-led discovery of ferroptosis-associated diagnostic biomarkers and molecule subtypes for tuberculosis patients
Article Snippet: A total of four TB-related gene expression microarrays (GSE83456, GSE42826, GSE28623, and GSE34608) downloaded from the GEO database of the National Center for Biotechnology Information (NCBI, https://www.ncbi.nlm.nih.gov/ ).

Article Title: Bioinformatics-led discovery of ferroptosis-associated diagnostic biomarkers and molecule subtypes for tuberculosis patients.
Article Snippet: A total of four TB-related gene expression microarrays (GSE83456, GSE42826, GSE28623, and GSE34608) downloaded from the GEO database of the National Center for Biotechnology Information (NCBI, https:// www. ncbi. nlm. nih. gov/).

Expressing:

Article Title: The heparan sulphate proteoglycan Syndecan-1 (CD138) regulates tumour progression in a 3D model of ductal carcinoma in situ of the breast.
Article Snippet: .. Details on the database are listed in the original publication.24 Briefly, for our analysis, gene chip mRNA expression data extracted from the Gene Expression Omnibus of the National Center for Biotechnology Information (NCBI-GEO) for a sample collective of 242 normal breast tissue samples, 7,569 breast cancer tissues and 3,889 breast cancer metastases were analysed with respect to Sdc-1 expression levels. ..

Gene Expression:

Article Title: The heparan sulphate proteoglycan Syndecan-1 (CD138) regulates tumour progression in a 3D model of ductal carcinoma in situ of the breast.
Article Snippet: .. Details on the database are listed in the original publication.24 Briefly, for our analysis, gene chip mRNA expression data extracted from the Gene Expression Omnibus of the National Center for Biotechnology Information (NCBI-GEO) for a sample collective of 242 normal breast tissue samples, 7,569 breast cancer tissues and 3,889 breast cancer metastases were analysed with respect to Sdc-1 expression levels. ..

Article Title: Tailored modulation of S100A1 and RASSF8 expression by butanediamide augments healing of rotator cuff tears
Article Snippet: .. Gene expression microarrays were searched using the keyword ‘RCTs’ in the GEO database of the National Center for Biotechnology Information (NCBI) with species selected as humans. ..

Article Title: NREP contributes to development of NAFLD by regulating one-carbon metabolism in primary human hepatocytes.
Article Snippet: In brief ‘‘De Jesus et al. demonstrate that NREP deficiency in human hepatocytes leads to transcriptomic remodeling and metabolic dysregulation, resembling key pathways implicated in NAFLD.. One carbon metabolism emerges as a potential mediator, highlighting NREP as a promising therapeutic target for improving NAFLD pathophysiology.. These findings provide valuable insights into the molecular mechanisms underlying NAFLD progression.’’.

Article Title: Construction of a co-expression network and prediction of metastasis markers in colorectal cancer patients with liver metastasis.
Article Snippet: .. Methods: Microarrays data of human CRC with liver metastasis (CRCLM) were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database to identify potential key genes. ..

Article Title: FMT rescues mice from DSS-induced colitis in a STING-dependent manner
Article Snippet: .. Gene expression microarrays for UC and CD patients were downloaded from the public gene expression omnibus (GEO) database of the National Center for Biotechnology Information (NCBI) under GSE87473, GSE36807, GSE75214, GSE16879, GSE207022 and GSE1710, respectively. ..

Article Title: SH3GL2 and MMP17 as lung adenocarcinoma biomarkers: a machine-learning based approach
Article Snippet: .. We obtained two gene expression profiling microarrays (GSE68571 and GSE74706) from the public Gene Expression Omnibus (GEO) database at the National Centre for Biotechnology Information (NCBI). ..



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Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Flowchart of the study design. Genomic and transcriptomic data were extracted from the GEO database ( GSE83448 ).

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Differentially expressed S-palmitoylation-related genes in 39 CD intestinal biopsies and 14 healthy controls. (A) PCA for GSE83448 . (B) Volcano plot illustrating 3743 DEGs. (C) Venn diagram depicting the overlap between DEGs and S-palmitoylation-related genes. (D) Heatmap representing the 23 SP-DEGs in CD and healthy controls. (E) Boxplots comparing the 23 SP-DEGs in CD and healthy controls. Abbreviations: CD: Crohn’s disease; PCA: Principal component analysis; DEGs: Differentially expressed genes; SP-DEGs: S-palmitoylation-related differentially expressed genes.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques:

Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Journal: Biomolecules and Biomedicine

Article Title: S-palmitoylation-related genes in Crohn’s disease: Bioinformatic identification and validation

doi: 10.17305/bb.2025.13221

Figure Lengend Snippet: Functional enrichment analysis of SP-DEGs in the GSE83448 dataset. (A) The bubble plot illustrates key enriched terms across various categories. BP denotes biological processes; CC indicates cellular components; and MF represents molecular functions. (B) The circle map emphasizes BPs associated with S-palmitoylation. (C) The bar plot presents the results of the functional enrichment analysis, ranked by statistical significance. (D) The Circos plot visualizes the functional associations across categories. Abbreviations: SP-DEGs: S-palmitoylation-related differentially expressed genes; BP: Biological process; CC: Cellular component; MF: Molecular function.

Article Snippet: The gene expression microarray dataset GSE83448 was obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO; https://www.ncbi.nlm.nih.gov/geo/ ) [ ].

Techniques: Functional Assay